Sequence Similarity Clusters for the Entities in PDB 1MCJ

Entity #1 | Chains: A,B
IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 18 1169
95 % 11 20 1418 Flexibility: Medium
Max RMSD: 14.5, Avg RMSD: 7.2
PDBFlex
90 % 51 86 241
70 % 1328 2362 1
50 % 2708 4781 1
40 % 2708 4781 1
30 % 3108 5635 1
Entity #2 | Chains: P
PEPTIDE N-ACETYL-D-PHE-L-HIS-D-PRO-NH2 protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures