Sequence Similarity Clusters for the Entities in PDB 1MCD

Entity #1 | Chains: A,B
IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 18 1140
95 % 9 20 1399 Flexibility: Medium
Max RMSD: 14.4, Avg RMSD: 7.3
PDBFlex
90 % 39 75 259
70 % 1257 2287 1
50 % 2567 4633 1
40 % 2567 4633 1
30 % 2946 5461 1
Entity #2 | Chains: P
PEPTIDE N-ACETYL-D-PHE-B-ALA-L-HIS-D-PRO-NH2 protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.