Sequence Similarity Clusters for the Entities in PDB 1MCD

Entity #1 | Chains: A,B
IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 18 1209
95 % 9 20 1469 Flexibility: Medium
Max RMSD: 14.5, Avg RMSD: 7.2
PDBFlex
90 % 53 93 231
70 % 1378 2479 1
50 % 2813 5021 1
40 % 2813 5021 1
30 % 3259 5951 1
Entity #2 | Chains: P
PEPTIDE N-ACETYL-D-PHE-B-ALA-L-HIS-D-PRO-NH2 protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures