Sequence Similarity Clusters for the Entities in PDB 1MCC

Entity #1 | Chains: A,B
IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 18 1207
95 % 13 20 1468 Flexibility: Medium
Max RMSD: 14.5, Avg RMSD: 7.2
PDBFlex
90 % 58 93 227
70 % 1441 2474 1
50 % 2936 5011 1
40 % 2936 5011 1
30 % 3414 5941 1
Entity #2 | Chains: P
PEPTIDE N-ACETYL-L-GLN-D-PHE-L-HIS-D-PRO-NH2 protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures