Sequence Similarity Clusters for the Entities in PDB 1MBX

Entity #1 | Chains: A,B
ATP-Dependent clp Protease ATP-Binding Subunit clp A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 4991
95 % 4 9 5286 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 4 9 5317
70 % 4 9 5183
50 % 4 9 4938
40 % 4 9 4644
30 % 4 9 4175
Entity #2 | Chains: C,D
Protein yljA protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 2654
95 % 6 12 2661 Flexibility: Low
Max RMSD: 13.2, Avg RMSD: 1.3
PDBFlex
90 % 6 12 2734
70 % 6 12 2709
50 % 6 12 2671
40 % 6 12 2602
30 % 6 12 2431

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3O2H 1 A ATP-dependent Clp protease adaptor protein ClpS 562
2 2W9R 1 A ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS CLPS PROTEIN FROM ESCHERICHIA COLI IN COMPLEX WITH LEU-PEPTIDE 562
3 3O2B 1 A, C ATP-dependent Clp protease adaptor protein ClpS unp residues 2-106 562
4 1R6O 2 C, D ATP-dependent Clp protease adaptor protein clpS 562
5 2WA8 1 A, C ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS CLPS PROTEIN FROM E. COLI AND N-END RULE PEPTIDE 562
6 1MBX 2 C, D Protein yljA 562
7 1R6Q 2 C, D ATP-dependent Clp protease adaptor protein clpS 562
8 1MBU 2 C, D Protein yljA 562
9 1MG9 1 A protein yljA 562
10 1LZW 1 A Protein yljA 562
11 2WA9 1 A, B, C, D, E, F, G ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS 562
12 1MBV 2 B Protein yljA 562