Sequence Similarity Clusters for the Entities in PDB 1MBX

Entity #1 | Chains: A,B
ATP-Dependent clp Protease ATP-Binding Subunit clp A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 4343
95 % 4 9 5130 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 4 9 5152
70 % 4 9 5072
50 % 4 9 4850
40 % 4 9 4591
30 % 4 9 4208
Entity #2 | Chains: C,D
Protein yljA protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 2184
95 % 6 12 2579 Flexibility: Low
Max RMSD: 13.2, Avg RMSD: 1.3
PDBFlex
90 % 6 12 2627
70 % 6 12 2613
50 % 6 12 2581
40 % 6 12 2538
30 % 6 12 2402

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1K6K 1 A ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA N-terminal, residues 1-143 562
2 1R6C 1 X ATP-dependent Clp protease ATP-binding subunit clpA N-terminal domain 562
3 1R6O 1 A, B ATP-dependent Clp protease ATP-binding subunit clpA N-Terminal domain 562
4 1MBX 1 A, B ATP-Dependent clp Protease ATP-Binding Subunit clp A 562
5 1R6Q 1 A, B ATP-dependent Clp protease ATP-binding subunit clpA N-terminal ClpA (residues 1-143) 562
6 1MBU 1 A, B ATP-Dependent clp Protease ATP-Binding Subunit clp A 562
7 1MG9 2 B ATP dependent clp protease ATP-binding subunit clpA Residues 1-146 562
8 1LZW 2 B ATP-dependent clp protease ATP-binding subunit ClpA Residues 1-146 562
9 1MBV 1 A ATP-Dependent clp Protease ATP-Binding Subunit clp A 562