Sequence Similarity Clusters for the Entities in PDB 1MBX

Entity #1 | Chains: A,B
ATP-Dependent clp Protease ATP-Binding Subunit clp A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 5036
95 % 4 9 5332 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 4 9 5359
70 % 4 9 5226
50 % 4 9 4981
40 % 4 9 4687
30 % 4 9 4218
Entity #2 | Chains: C,D
Protein yljA protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 2679
95 % 6 12 2677 Flexibility: Low
Max RMSD: 13.2, Avg RMSD: 1.3
PDBFlex
90 % 6 12 2748
70 % 6 12 2729
50 % 6 12 2688
40 % 6 12 2618
30 % 6 12 2449

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1K6K 1 A ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA N-terminal, residues 1-143 562
2 1R6C 1 X ATP-dependent Clp protease ATP-binding subunit clpA N-terminal domain 562
3 1R6O 1 A, B ATP-dependent Clp protease ATP-binding subunit clpA N-Terminal domain 562
4 1MBX 1 A, B ATP-Dependent clp Protease ATP-Binding Subunit clp A 562
5 1R6Q 1 A, B ATP-dependent Clp protease ATP-binding subunit clpA N-terminal ClpA (residues 1-143) 562
6 1MBU 1 A, B ATP-Dependent clp Protease ATP-Binding Subunit clp A 562
7 1MG9 2 B ATP dependent clp protease ATP-binding subunit clpA Residues 1-146 562
8 1LZW 2 B ATP-dependent clp protease ATP-binding subunit ClpA Residues 1-146 562
9 1MBV 1 A ATP-Dependent clp Protease ATP-Binding Subunit clp A 562