Sequence Similarity Clusters for the Entities in PDB 1MBX

Entity #1 | Chains: A,B
ATP-Dependent clp Protease ATP-Binding Subunit clp A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 4982
95 % 4 9 5281 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 4 9 5311
70 % 4 9 5178
50 % 4 9 4935
40 % 4 9 4641
30 % 4 9 4174
Entity #2 | Chains: C,D
Protein yljA protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 2641
95 % 6 12 2644 Flexibility: Low
Max RMSD: 13.2, Avg RMSD: 1.3
PDBFlex
90 % 6 12 2715
70 % 6 12 2692
50 % 6 12 2658
40 % 6 12 2596
30 % 6 12 2426

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1K6K 1 A ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA N-terminal, residues 1-143 562
2 1R6C 1 X ATP-dependent Clp protease ATP-binding subunit clpA N-terminal domain 562
3 1R6O 1 A, B ATP-dependent Clp protease ATP-binding subunit clpA N-Terminal domain 562
4 1MBX 1 A, B ATP-Dependent clp Protease ATP-Binding Subunit clp A 562
5 1R6Q 1 A, B ATP-dependent Clp protease ATP-binding subunit clpA N-terminal ClpA (residues 1-143) 562
6 1MBU 1 A, B ATP-Dependent clp Protease ATP-Binding Subunit clp A 562
7 1MG9 2 B ATP dependent clp protease ATP-binding subunit clpA Residues 1-146 562
8 1LZW 2 B ATP-dependent clp protease ATP-binding subunit ClpA Residues 1-146 562
9 1MBV 1 A ATP-Dependent clp Protease ATP-Binding Subunit clp A 562