Sequence Similarity Clusters for the Entities in PDB 1MBU

Entity #1 | Chains: A,B
ATP-Dependent clp Protease ATP-Binding Subunit clp A protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 4456
95 % 6 9 5251 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 6 9 5271
70 % 6 9 5176
50 % 6 9 4946
40 % 6 9 4682
30 % 6 9 4282
Entity #2 | Chains: C,D
Protein yljA protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 2255
95 % 8 12 2636 Flexibility: Low
Max RMSD: 13.2, Avg RMSD: 1.3
PDBFlex
90 % 8 12 2690
70 % 8 12 2676
50 % 8 12 2642
40 % 8 12 2594
30 % 8 12 2445

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures