Sequence Similarity Clusters for the Entities in PDB 1MAM

Entity #1 | Chains: L
IGG2B-KAPPA YST9.1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62676
95 % 18 54 579 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 25 68 398
70 % 1259 2474 1
50 % 2573 5011 1
40 % 2573 5011 1
30 % 2968 5941 1
Entity #2 | Chains: H
IGG2B-KAPPA YST9.1 FAB (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62283
95 % 1 1 43662
90 % 3 3 22978
70 % 1248 2424 2
50 % 2574 5011 1
40 % 2574 5011 1
30 % 2969 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures