Sequence Similarity Clusters for the Entities in PDB 1MAM

Entity #1 | Chains: L
IGG2B-KAPPA YST9.1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59464
95 % 18 53 550 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.9
PDBFlex
90 % 25 67 364
70 % 1137 2264 1
50 % 2327 4587 1
40 % 2327 4587 1
30 % 2651 5394 1
Entity #2 | Chains: H
IGG2B-KAPPA YST9.1 FAB (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59102
95 % 1 1 41476
90 % 3 3 21734
70 % 1131 2222 2
50 % 2328 4587 1
40 % 2328 4587 1
30 % 2652 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.