Sequence Similarity Clusters for the Entities in PDB 1MAM

Entity #1 | Chains: L
IGG2B-KAPPA YST9.1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60249
95 % 18 53 563 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 25 67 370
70 % 1147 2287 1
50 % 2347 4633 1
40 % 2347 4633 1
30 % 2680 5461 1
Entity #2 | Chains: H
IGG2B-KAPPA YST9.1 FAB (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59880
95 % 1 1 42031
90 % 3 3 22100
70 % 1141 2244 2
50 % 2348 4633 1
40 % 2348 4633 1
30 % 2681 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.