Sequence Similarity Clusters for the Entities in PDB 1MAM

Entity #1 | Chains: L
IGG2B-KAPPA YST9.1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61532
95 % 18 54 569 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 25 68 377
70 % 1211 2392 1
50 % 2475 4843 1
40 % 2475 4843 1
30 % 2821 5705 1
Entity #2 | Chains: H
IGG2B-KAPPA YST9.1 FAB (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61145
95 % 1 1 42904
90 % 3 3 22548
70 % 1200 2342 2
50 % 2476 4843 1
40 % 2476 4843 1
30 % 2822 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures