Sequence Similarity Clusters for the Entities in PDB 1MAM

Entity #1 | Chains: L
IGG2B-KAPPA YST9.1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60136
95 % 18 54 584 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 25 68 401
70 % 1290 2553 1
50 % 2644 5180 1
40 % 3026 5834 1
30 % 3709 7269 1
Entity #2 | Chains: H
IGG2B-KAPPA YST9.1 FAB (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59201
95 % 1 1 48395
90 % 3 3 23955
70 % 1282 2511 2
50 % 2645 5180 1
40 % 3027 5834 1
30 % 3710 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures