Sequence Similarity Clusters for the Entities in PDB 1MAH

Entity #1 | Chains: A
ACETYLCHOLINESTERASE protein, length: 543 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 74 77 203
95 % 85 88 232 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 85 88 240
70 % 114 117 185
50 % 274 287 105
40 % 276 290 122
30 % 355 381 81
Entity #2 | Chains: F
FASCICULIN 2 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 8791
95 % 9 10 7889 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 9 10 7820
70 % 10 11 6767
50 % 24 39 1389
40 % 54 127 388
30 % 59 135 345

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures