Sequence Similarity Clusters for the Entities in PDB 1MAF

Entity #1 | Chains: L
METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT) protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28409
95 % 37 40 485 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 37 40 519
70 % 37 41 543
50 % 37 41 587
40 % 64 68 353
30 % 64 68 360
Entity #2 | Chains: H
METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT) protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25253
95 % 2 3 21332 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 3 20735
70 % 2 3 19093
50 % 2 4 11186
40 % 37 42 604
30 % 37 42 597

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.