Sequence Similarity Clusters for the Entities in PDB 1MAF

Entity #1 | Chains: L
METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT) protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28925
95 % 37 40 492 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 37 40 526
70 % 37 41 548
50 % 37 41 598
40 % 64 68 363
30 % 64 68 367
Entity #2 | Chains: H
METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT) protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25704
95 % 2 3 21744 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 3 21128
70 % 2 3 19399
50 % 2 4 11387
40 % 37 42 612
30 % 37 42 603

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.