Sequence Similarity Clusters for the Entities in PDB 1MAE

Entity #1 | Chains: L
METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT) protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 30152
95 % 39 40 532
90 % 39 40 559
70 % 39 41 578
50 % 39 41 617
40 % 66 68 409
30 % 66 68 405
Entity #2 | Chains: H
METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT) protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26860
95 % 3 3 22655 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 3 3 21987
70 % 3 3 20165
50 % 3 4 11855
40 % 39 42 637
30 % 39 42 623

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures