Sequence Similarity Clusters for the Entities in PDB 1MAE

Entity #1 | Chains: L
METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT) protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 29795
95 % 39 40 525
90 % 39 40 553
70 % 39 41 570
50 % 39 41 609
40 % 66 68 394
30 % 66 68 399
Entity #2 | Chains: H
METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT) protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26504
95 % 3 3 22362 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 3 3 21711
70 % 3 3 19923
50 % 3 4 11700
40 % 39 42 631
30 % 39 42 614

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures