Sequence Similarity Clusters for the Entities in PDB 1MAB

Entity #1 | Chains: A
PROTEIN (F1-ATPASE ALPHA CHAIN) protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51668
95 % 13 41 285 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 13 41 298
70 % 17 59 170
50 % 19 71 172
40 % 19 71 186
30 % 19 71 201
Entity #2 | Chains: B
PROTEIN (F1-ATPASE BETA CHAIN) protein, length: 479 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32327
95 % 13 42 286 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 13 42 299
70 % 19 72 143
50 % 19 72 173
40 % 19 72 187
30 % 19 72 202
Entity #3 | Chains: G
PROTEIN (F1-ATPASE GAMMA CHAIN) protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57543
95 % 1 2 29380 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 28352
70 % 13 41 1206
50 % 13 41 1264
40 % 17 65 637
30 % 17 65 625

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.