Sequence Similarity Clusters for the Entities in PDB 1MAB

Entity #1 | Chains: A
PROTEIN (F1-ATPASE ALPHA CHAIN) protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40042
95 % 13 41 302 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 13 41 314
70 % 17 62 171
50 % 19 77 172
40 % 19 77 185
30 % 19 77 204
Entity #2 | Chains: B
PROTEIN (F1-ATPASE BETA CHAIN) protein, length: 479 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39029
95 % 13 42 303 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 13 42 315
70 % 19 78 144
50 % 19 79 170
40 % 19 79 183
30 % 19 79 202
Entity #3 | Chains: G
PROTEIN (F1-ATPASE GAMMA CHAIN) protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57829
95 % 1 2 33018 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 31606
70 % 13 41 1273
50 % 13 41 1330
40 % 17 68 640
30 % 17 68 637

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures