Sequence Similarity Clusters for the Entities in PDB 1MAB

Entity #1 | Chains: A
PROTEIN (F1-ATPASE ALPHA CHAIN) protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52538
95 % 13 41 295 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 13 41 308
70 % 17 60 169
50 % 19 72 172
40 % 19 72 186
30 % 19 72 199
Entity #2 | Chains: B
PROTEIN (F1-ATPASE BETA CHAIN) protein, length: 479 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32931
95 % 13 42 296 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 13 42 309
70 % 19 73 142
50 % 19 74 167
40 % 19 74 182
30 % 19 74 195
Entity #3 | Chains: G
PROTEIN (F1-ATPASE GAMMA CHAIN) protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58495
95 % 1 2 29861 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 28805
70 % 13 41 1224
50 % 13 41 1287
40 % 17 66 636
30 % 17 66 618

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures