Sequence Similarity Clusters for the Entities in PDB 1MAB

Entity #1 | Chains: A
PROTEIN (F1-ATPASE ALPHA CHAIN) protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50421
95 % 13 41 275 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 13 41 287
70 % 17 193 165
50 % 19 71 165
40 % 19 71 181
30 % 19 71 196
Entity #2 | Chains: B
PROTEIN (F1-ATPASE BETA CHAIN) protein, length: 479 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31456
95 % 13 42 276 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 13 42 288
70 % 19 72 137
50 % 19 72 166
40 % 19 72 182
30 % 19 72 197
Entity #3 | Chains: G
PROTEIN (F1-ATPASE GAMMA CHAIN) protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56166
95 % 1 2 28625 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 27640
70 % 13 41 1179
50 % 13 41 1238
40 % 17 65 623
30 % 17 65 616

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.