Sequence Similarity Clusters for the Entities in PDB 1MA9

Entity #1 | Chains: A
Vitamin D-binding protein protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51782
95 % 3 6 7468 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.6
PDBFlex
90 % 3 6 7423
70 % 3 6 7241
50 % 3 6 6660
40 % 3 6 6206
30 % 3 6 5554
Entity #2 | Chains: B
Actin, Alpha Skeletal Muscle protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 123 23
95 % 77 179 15 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 79 184 15
70 % 82 189 23
50 % 82 192 36
40 % 83 211 41
30 % 84 231 53

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.