Sequence Similarity Clusters for the Entities in PDB 1MA9

Entity #1 | Chains: A
Vitamin D-binding protein protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51107
95 % 3 6 7355 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.5
PDBFlex
90 % 3 6 7314
70 % 3 6 7103
50 % 3 6 6546
40 % 3 6 6105
30 % 3 6 5469
Entity #2 | Chains: B
Actin, Alpha Skeletal Muscle protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 123 22
95 % 77 178 15
90 % 79 183 15
70 % 82 187 23
50 % 82 190 37
40 % 83 209 39
30 % 84 229 52

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.