Sequence Similarity Clusters for the Entities in PDB 1M9Y

Entity #1 | Chains: A,B,E,F
Cyclophilin A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 71 112 111
95 % 79 126 141 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 79 127 150
70 % 122 184 124
50 % 140 223 108
40 % 146 241 126
30 % 150 251 130
Entity #2 | Chains: C,D,G,H
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22210
95 % 12 45 210 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.3
PDBFlex
90 % 13 46 218
70 % 13 46 247
50 % 15 50 256
40 % 15 50 272
30 % 17 53 273

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.