Sequence Similarity Clusters for the Entities in PDB 1M9X

Entity #1 | Chains: A,B,E,F
Cyclophilin A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 112 112
95 % 50 126 143 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 50 127 151
70 % 84 184 128
50 % 94 223 110
40 % 97 241 126
30 % 98 251 131
Entity #2 | Chains: C,D,G,H
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22558
95 % 5 45 214 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 6 46 221
70 % 6 46 249
50 % 8 50 259
40 % 8 50 275
30 % 9 53 275

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.