Sequence Similarity Clusters for the Entities in PDB 1M9X

Entity #1 | Chains: A,B,E,F
Cyclophilin A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 112 112
95 % 50 126 142 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 50 127 151
70 % 84 184 125
50 % 94 223 108
40 % 97 241 125
30 % 98 251 130
Entity #2 | Chains: C,D,G,H
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22161
95 % 5 45 211 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 6 46 219
70 % 6 46 248
50 % 8 50 256
40 % 8 50 272
30 % 9 53 273

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.