Sequence Similarity Clusters for the Entities in PDB 1M9P

Entity #1 | Chains: A,C
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 145 214 23
95 % 169 245 19 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 170 246 21
70 % 210 327 15
50 % 496 744 4
40 % 501 749 8
30 % 930 1201 8
Entity #2 | Chains: B,D
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 6691
95 % 176 245 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 179 250 19
70 % 226 341 13
50 % 497 744 4
40 % 502 749 8
30 % 931 1201 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures