Sequence Similarity Clusters for the Entities in PDB 1M9F

Entity #1 | Chains: A,B
Cyclophilin A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 101 148
95 % 53 115 148 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 53 116 157
70 % 87 173 134
50 % 98 211 112
40 % 101 228 128
30 % 102 238 136
Entity #2 | Chains: C,D
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42697
95 % 6 45 207 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 7 46 215
70 % 7 46 244
50 % 9 50 250
40 % 9 50 268
30 % 10 53 267

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.