Sequence Similarity Clusters for the Entities in PDB 1M9F

Entity #1 | Chains: A,B
Cyclophilin A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 54 112 139
95 % 64 128 149 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 64 129 159
70 % 98 186 140
50 % 109 225 120
40 % 112 243 137
30 % 113 253 136
Entity #2 | Chains: C,D
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45823
95 % 6 45 229 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 7 46 238
70 % 7 46 268
50 % 9 50 274
40 % 9 50 288
30 % 10 53 290

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures