Sequence Similarity Clusters for the Entities in PDB 1M9E

Entity #1 | Chains: A,B
Cyclophilin A protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 112 112
95 % 64 126 143 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 64 127 151
70 % 99 184 128
50 % 110 223 110
40 % 115 241 126
30 % 117 251 131
Entity #2 | Chains: C,D
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43935
95 % 7 45 214 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 8 46 221
70 % 8 46 249
50 % 10 50 259
40 % 10 50 275
30 % 11 53 275

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.