Sequence Similarity Clusters for the Entities in PDB 1M9E

Entity #1 | Chains: A,B
Cyclophilin A protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 95 135
95 % 51 109 147
90 % 51 110 156
70 % 86 167 134
50 % 97 205 111
40 % 102 221 127
30 % 104 231 135
Entity #2 | Chains: C,D
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41080
95 % 7 45 180
90 % 8 46 181
70 % 8 46 206
50 % 10 50 228
40 % 10 50 255
30 % 11 53 259

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.