Sequence Similarity Clusters for the Entities in PDB 1M9D

Entity #1 | Chains: A,B
Cyclophilin A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 88 226
95 % 90 137 154 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 90 138 166
70 % 134 197 149
50 % 154 252 127
40 % 158 263 141
30 % 162 273 150
Entity #2 | Chains: C,D
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42281
95 % 13 45 246 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 14 46 253
70 % 14 46 296
50 % 16 50 329
40 % 16 50 368
30 % 18 53 359

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures