Sequence Similarity Clusters for the Entities in PDB 1M9C

Entity #1 | Chains: A,B
Cyclophilin A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 95 114
95 % 78 109 144
90 % 78 110 154
70 % 132 167 131
50 % 163 205 111
40 % 170 221 125
30 % 176 231 135
Entity #2 | Chains: C,D
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 17 1464
95 % 21 27 715
90 % 22 28 712
70 % 22 28 754
50 % 24 32 702
40 % 24 32 743
30 % 27 35 700

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.