Sequence Similarity Clusters for the Entities in PDB 1M9C

Entity #1 | Chains: A,B
Cyclophilin A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 80 228
95 % 95 128 156 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 95 129 164
70 % 150 187 149
50 % 184 241 120
40 % 189 250 135
30 % 195 260 142
Entity #2 | Chains: C,D
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 15 1447
95 % 21 45 242 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 22 46 250
70 % 22 46 279
50 % 24 50 294
40 % 24 50 327
30 % 27 53 324

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures