Sequence Similarity Clusters for the Entities in PDB 1M9C

Entity #1 | Chains: A,B
Cyclophilin A protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 83 112 116
95 % 93 126 146 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.5
PDBFlex
90 % 93 127 156
70 % 147 184 133
50 % 178 223 113
40 % 185 241 132
30 % 191 251 132
Entity #2 | Chains: C,D
HIV-1 Capsid protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 35 203
95 % 21 45 221 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.4
PDBFlex
90 % 22 46 227
70 % 22 46 258
50 % 24 50 263
40 % 24 50 278
30 % 27 53 279

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures