Sequence Similarity Clusters for the Entities in PDB 1M90

Entity #1 | Chains: A
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
RIBOSOMAL PROTEIN L10 protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 44 790
95 % 26 64 682
90 % 26 64 714
70 % 26 64 757
50 % 26 64 811
40 % 26 64 834
30 % 26 65 821
Entity #11 | Chains: J
RIBOSOMAL PROTEIN L10E protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 2328
95 % 2 20 2956
90 % 2 20 3000
70 % 2 27 2078
50 % 27 74 671
40 % 27 79 658
30 % 27 79 668
Entity #12 | Chains: K
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 404
95 % 27 74 564
90 % 27 74 592
70 % 27 74 626
50 % 27 74 676
40 % 28 77 681
30 % 28 78 677
Entity #13 | Chains: L
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 44 803
95 % 27 68 636
90 % 27 68 663
70 % 27 68 705
50 % 27 174 198
40 % 27 174 217
30 % 32 506 29
Entity #14 | Chains: M
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 403
95 % 27 74 563
90 % 27 74 591
70 % 27 74 623
50 % 27 74 672
40 % 27 74 711
30 % 31 488 35
Entity #15 | Chains: N
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 2313
95 % 2 20 2937
90 % 2 20 2983
70 % 27 68 697
50 % 27 170 205
40 % 27 170 227
30 % 27 170 233
Entity #16 | Chains: O
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 401
95 % 27 74 561
90 % 27 74 589
70 % 27 74 620
50 % 27 76 651
40 % 27 76 693
30 % 27 79 665
Entity #17 | Chains: P
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 451
95 % 27 68 637
90 % 27 68 665
70 % 27 68 707
50 % 27 70 729
40 % 27 70 766
30 % 27 70 765
Entity #18 | Chains: Q
RIBOSOMAL PROTEIN L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 2128
95 % 27 68 635
90 % 27 68 661
70 % 27 68 703
50 % 27 68 754
40 % 27 72 737
30 % 27 72 736
Entity #19 | Chains: R
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 453
95 % 27 68 640
90 % 27 68 667
70 % 27 68 711
50 % 27 70 730
40 % 27 70 767
30 % 27 71 749
Entity #2 | Chains: B
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 67 462
95 % 27 68 633
90 % 27 68 659
70 % 27 68 700
50 % 27 68 751
40 % 27 68 785
30 % 27 173 226
Entity #21 | Chains: T
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 410
95 % 27 74 569
90 % 27 74 596
70 % 27 74 630
50 % 27 76 654
40 % 27 78 670
30 % 31 397 57
Entity #22 | Chains: U
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 407
95 % 27 74 566
90 % 27 74 594
70 % 27 74 628
50 % 27 178 191
40 % 27 178 208
30 % 27 178 221
Entity #23 | Chains: V
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 70 434
95 % 26 70 615
90 % 26 70 641
70 % 26 70 680
50 % 26 70 731
40 % 26 70 769
30 % 26 70 767
Entity #24 | Chains: W
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 412
95 % 27 74 570
90 % 27 74 597
70 % 27 74 631
50 % 27 74 678
40 % 27 74 715
30 % 27 74 715
Entity #25 | Chains: X
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 449
95 % 27 68 634
90 % 27 68 660
70 % 27 68 701
50 % 27 68 752
40 % 27 70 763
30 % 27 71 746
Entity #26 | Chains: Y
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 455
95 % 27 68 642
90 % 27 68 669
70 % 27 68 713
50 % 27 68 759
40 % 27 68 790
30 % 27 68 788
Entity #27 | Chains: Z
RIBOSOMAL PROTEIN L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 63 496
95 % 26 63 706
90 % 26 63 738
70 % 26 63 783
50 % 26 63 830
40 % 26 63 851
30 % 26 63 847
Entity #28 | Chains: 1
RIBOSOMAL PROTEIN L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 2388
95 % 2 20 3004
90 % 2 20 3045
70 % 2 21 2798
50 % 4 30 1870
40 % 4 127 292
30 % 21 150 262
Entity #29 | Chains: 2
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 456
95 % 27 68 643
90 % 27 68 670
70 % 27 68 716
50 % 27 69 739
40 % 27 69 779
30 % 27 69 778
Entity #3 | Chains: 5
CCA rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: 3
RIBOSOMAL PROTEIN L39E protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 2395
95 % 27 68 644
90 % 27 68 671
70 % 27 68 717
50 % 27 171 201
40 % 27 171 224
30 % 27 171 231
Entity #31 | Chains: 4
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 454
95 % 27 68 641
90 % 27 68 668
70 % 27 68 712
50 % 27 68 758
40 % 27 68 789
30 % 27 167 237
Entity #4 | Chains: C
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 2112
95 % 27 68 630
90 % 27 68 656
70 % 27 68 696
50 % 27 169 204
40 % 27 171 223
30 % 27 171 230
Entity #5 | Chains: D
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 67 459
95 % 27 74 552
90 % 27 74 582
70 % 27 74 615
50 % 27 74 666
40 % 27 178 205
30 % 27 178 218
Entity #6 | Chains: E
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 44 796
95 % 27 74 556
90 % 27 74 586
70 % 27 74 619
50 % 27 74 668
40 % 27 76 691
30 % 28 78 674
Entity #7 | Chains: F
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 402
95 % 27 74 562
90 % 27 74 590
70 % 27 74 621
50 % 27 74 670
40 % 28 178 207
30 % 28 178 220
Entity #8 | Chains: G
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 448
95 % 27 68 632
90 % 27 68 658
70 % 27 68 699
50 % 27 68 750
40 % 27 172 221
30 % 32 497 32
Entity #9 | Chains: H
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 2139
95 % 2 21 2768
90 % 27 68 664
70 % 27 68 706
50 % 41 105 311
40 % 48 120 281
30 % 48 122 278

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.