Sequence Similarity Clusters for the Entities in PDB 1M90

Entity #1 | Chains: A
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
RIBOSOMAL PROTEIN L10 protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 44 814
95 % 26 64 723
90 % 26 64 755
70 % 26 64 796
50 % 26 64 846
40 % 26 64 869
30 % 26 65 840
Entity #11 | Chains: J
RIBOSOMAL PROTEIN L10E protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 2359
95 % 2 20 2988
90 % 2 20 3031
70 % 2 27 2105
50 % 27 74 687
40 % 27 79 670
30 % 27 79 676
Entity #12 | Chains: K
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 417
95 % 27 74 578
90 % 27 74 609
70 % 27 74 642
50 % 27 74 692
40 % 28 77 693
30 % 28 78 685
Entity #13 | Chains: L
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 44 827
95 % 27 68 653
90 % 27 68 682
70 % 27 68 727
50 % 27 175 201
40 % 27 175 222
30 % 32 509 31
Entity #14 | Chains: M
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 416
95 % 27 74 577
90 % 27 74 608
70 % 27 74 639
50 % 27 74 688
40 % 27 74 727
30 % 31 491 37
Entity #15 | Chains: N
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 2344
95 % 2 20 2969
90 % 2 20 3014
70 % 27 68 719
50 % 27 171 206
40 % 27 171 230
30 % 27 171 236
Entity #16 | Chains: O
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 414
95 % 27 74 575
90 % 27 74 606
70 % 27 74 636
50 % 27 76 661
40 % 27 76 702
30 % 27 79 674
Entity #17 | Chains: P
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 465
95 % 27 68 654
90 % 27 68 684
70 % 27 68 729
50 % 27 70 751
40 % 27 70 788
30 % 27 70 781
Entity #18 | Chains: Q
RIBOSOMAL PROTEIN L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 2158
95 % 27 68 652
90 % 27 68 680
70 % 27 68 725
50 % 27 68 779
40 % 27 72 754
30 % 27 72 749
Entity #19 | Chains: R
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 467
95 % 27 68 657
90 % 27 68 686
70 % 27 68 732
50 % 27 70 754
40 % 27 70 791
30 % 27 71 762
Entity #2 | Chains: B
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 67 482
95 % 27 68 650
90 % 27 68 678
70 % 27 68 722
50 % 27 68 776
40 % 27 68 813
30 % 27 174 230
Entity #21 | Chains: T
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 422
95 % 27 74 582
90 % 27 74 612
70 % 27 74 645
50 % 27 76 665
40 % 27 78 681
30 % 31 399 58
Entity #22 | Chains: U
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 420
95 % 27 74 580
90 % 27 74 611
70 % 27 74 644
50 % 27 179 195
40 % 27 179 213
30 % 27 179 225
Entity #23 | Chains: V
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 70 447
95 % 26 70 628
90 % 26 70 656
70 % 26 70 703
50 % 26 70 756
40 % 26 70 795
30 % 26 70 787
Entity #24 | Chains: W
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 423
95 % 27 74 583
90 % 27 74 613
70 % 27 74 646
50 % 27 74 693
40 % 27 74 730
30 % 27 74 726
Entity #25 | Chains: X
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 463
95 % 27 68 651
90 % 27 68 679
70 % 27 68 723
50 % 27 68 777
40 % 27 70 785
30 % 27 71 759
Entity #26 | Chains: Y
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 469
95 % 27 68 659
90 % 27 68 688
70 % 27 68 734
50 % 27 68 782
40 % 27 68 817
30 % 27 68 808
Entity #27 | Chains: Z
RIBOSOMAL PROTEIN L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 63 534
95 % 26 63 746
90 % 26 63 775
70 % 26 63 818
50 % 26 63 862
40 % 26 63 884
30 % 26 63 872
Entity #28 | Chains: 1
RIBOSOMAL PROTEIN L37Ae protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 2418
95 % 2 20 3035
90 % 2 20 3074
70 % 2 21 2827
50 % 4 30 1894
40 % 4 128 298
30 % 21 151 269
Entity #29 | Chains: 2
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 470
95 % 27 68 660
90 % 27 68 689
70 % 27 68 736
50 % 27 69 766
40 % 27 69 807
30 % 27 69 800
Entity #3 | Chains: 5
CCA rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: 3
RIBOSOMAL PROTEIN L39E protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 2425
95 % 27 68 661
90 % 27 68 690
70 % 27 68 737
50 % 27 172 203
40 % 27 172 228
30 % 27 172 234
Entity #31 | Chains: 4
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 468
95 % 27 68 658
90 % 27 68 687
70 % 27 68 733
50 % 27 68 781
40 % 27 68 816
30 % 27 168 242
Entity #4 | Chains: C
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 2141
95 % 27 68 647
90 % 27 68 675
70 % 27 68 718
50 % 27 170 205
40 % 27 172 227
30 % 27 172 232
Entity #5 | Chains: D
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 67 478
95 % 27 74 567
90 % 27 74 599
70 % 27 74 631
50 % 27 74 682
40 % 27 179 211
30 % 27 179 222
Entity #6 | Chains: E
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 44 820
95 % 27 74 571
90 % 27 74 604
70 % 27 74 635
50 % 27 74 684
40 % 27 76 700
30 % 28 78 682
Entity #7 | Chains: F
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 74 415
95 % 27 74 576
90 % 27 74 607
70 % 27 74 637
50 % 27 74 686
40 % 28 179 212
30 % 28 179 224
Entity #8 | Chains: G
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 68 462
95 % 27 68 649
90 % 27 68 677
70 % 27 68 721
50 % 27 68 775
40 % 27 173 224
30 % 32 500 34
Entity #9 | Chains: H
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 21 2169
95 % 2 21 2798
90 % 27 68 683
70 % 27 68 728
50 % 41 105 319
40 % 48 122 276
30 % 48 124 277

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.