Sequence Similarity Clusters for the Entities in PDB 1M8Y

Entity #1 | Chains: C,D
5'-R(P*AP*UP*UP*GP*UP*AP*CP*AP*UP*A)-3' rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Pumilio 1 protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 2152
95 % 9 13 2456 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 13 18 1896
70 % 15 22 1594
50 % 15 22 1627
40 % 15 24 1382
30 % 16 28 1163

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.