Sequence Similarity Clusters for the Entities in PDB 1M8X

Entity #1 | Chains: C
5'-R(P*UP*UP*GP*UP*AP*UP*AP*U)-3' rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-R(P*UP*GP*UP*AP*UP*AP*U)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Pumilio 1 protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 2169
95 % 4 13 2477 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 8 18 1910
70 % 9 22 1601
50 % 9 22 1639
40 % 9 24 1390
30 % 9 28 1172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures