Sequence Similarity Clusters for the Entities in PDB 1M8X

Entity #1 | Chains: C
5'-R(P*UP*UP*GP*UP*AP*UP*AP*U)-3' rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-R(P*UP*GP*UP*AP*UP*AP*U)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Pumilio 1 protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 2217
95 % 4 13 2529 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 8 18 1953
70 % 9 22 1637
50 % 9 22 1673
40 % 9 24 1414
30 % 9 28 1186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures