Sequence Similarity Clusters for the Entities in PDB 1M8W

Entity #1 | Chains: C
5'-R(P*UP*UP*GP*UP*AP*UP*AP*U)-3' rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-R(P*UP*GP*UP*AP*UP*AP*U)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E
5'-R(P*UP*UP*GP*UP*CP*CP*AP*G)-3' rna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F
5'-R(P*UP*GP*UP*CP*CP*AP*G)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A,B
Pumilio 1 protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 12 2061
95 % 3 13 2369 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 7 18 1839
70 % 8 22 1541
50 % 8 22 1569
40 % 8 24 1346
30 % 8 28 1131

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.