Sequence Similarity Clusters for the Entities in PDB 1M8V

Entity #1 | Chains: O,P,Q,R,S,T,U
5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,E,F,G,H,I,J,K,L,M,N
PUTATIVE SNRNP SM-LIKE PROTEIN protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 1106
95 % 2 2 1319 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 2 2 1342
70 % 2 2 1365
50 % 4 5 554
40 % 5 8 393
30 % 10 40 271

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures