Sequence Similarity Clusters for the Entities in PDB 1M8V

Entity #1 | Chains: O,P,Q,R,S,T,U
5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,E,F,G,H,I,J,K,L,M,N
PUTATIVE SNRNP SM-LIKE PROTEIN protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 950
95 % 2 2 1279 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 2 2 1309
70 % 2 2 1333
50 % 4 5 540
40 % 5 8 354
30 % 7 14 315

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures