Sequence Similarity Clusters for the Entities in PDB 1M8Q

Entity #1 | Chains: A,D,G,P
Skeletal muscle Myosin II protein, length: 840 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 596
95 % 15 15 773
90 % 15 15 800
70 % 19 19 754
50 % 50 50 446
40 % 98 101 284
30 % 123 126 238
Entity #2 | Chains: B,E,H,Q
Skeletal muscle Myosin II Regulatory Light Chain protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 11 645
95 % 14 14 806
90 % 14 14 841
70 % 16 16 837
50 % 46 47 507
40 % 322 339 39
30 % 349 366 49
Entity #3 | Chains: C,F,I,R
Skeletal muscle Myosin II Essential Light Chain protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 633
95 % 15 15 799
90 % 15 15 831
70 % 24 25 610
50 % 24 25 653
40 % 323 339 39
30 % 350 366 49
Entity #4 | Chains: 0,1,2,3,4,5,7,8,9,V,W,X,Y,Z
Skeletal muscle Actin protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 123 23
95 % 179 179 15
90 % 184 184 15
70 % 189 189 23
50 % 192 192 36
40 % 211 211 41
30 % 231 231 53

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.