Sequence Similarity Clusters for the Entities in PDB 1M8Q

Entity #1 | Chains: A,D,G,P
Skeletal muscle Myosin II protein, length: 840 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 601
95 % 15 15 780
90 % 15 15 809
70 % 19 19 761
50 % 50 50 450
40 % 98 101 289
30 % 123 126 239
Entity #2 | Chains: B,E,H,Q
Skeletal muscle Myosin II Regulatory Light Chain protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 11 654
95 % 14 14 814
90 % 14 14 850
70 % 16 16 844
50 % 46 47 512
40 % 324 341 41
30 % 351 368 53
Entity #3 | Chains: C,F,I,R
Skeletal muscle Myosin II Essential Light Chain protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 640
95 % 15 15 806
90 % 15 15 839
70 % 24 25 616
50 % 24 25 661
40 % 325 341 41
30 % 352 368 53
Entity #4 | Chains: 0,1,2,3,4,5,7,8,9,V,W,X,Y,Z
Skeletal muscle Actin protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 124 21
95 % 181 181 14
90 % 186 186 14
70 % 191 191 20
50 % 194 194 25
40 % 213 213 36
30 % 233 233 51

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.