Sequence Similarity Clusters for the Entities in PDB 1M8Q

Entity #1 | Chains: A,D,G,P
Skeletal muscle Myosin II protein, length: 840 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 611
95 % 15 15 796
90 % 15 15 825
70 % 19 19 768
50 % 50 50 456
40 % 98 101 295
30 % 130 133 220
Entity #2 | Chains: B,E,H,Q
Skeletal muscle Myosin II Regulatory Light Chain protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 11 669
95 % 14 14 838
90 % 14 14 873
70 % 16 16 856
50 % 46 47 527
40 % 330 347 41
30 % 357 374 53
Entity #3 | Chains: C,F,I,R
Skeletal muscle Myosin II Essential Light Chain protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 659
95 % 15 15 827
90 % 15 15 862
70 % 24 25 629
50 % 24 25 676
40 % 331 347 41
30 % 358 374 53
Entity #4 | Chains: 0,1,2,3,4,5,7,8,9,V,W,X,Y,Z
Skeletal muscle Actin protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 137 8
95 % 197 197 8
90 % 202 202 10
70 % 207 207 11
50 % 214 214 15
40 % 233 233 23
30 % 253 253 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures