Sequence Similarity Clusters for the Entities in PDB 1M8Q

Entity #1 | Chains: A,D,G,P
Skeletal muscle Myosin II protein, length: 840 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 508
95 % 15 15 674
90 % 15 15 703
70 % 16 16 715
50 % 47 47 408
40 % 97 100 261
30 % 122 125 216
Entity #2 | Chains: B,E,H,Q
Skeletal muscle Myosin II Regulatory Light Chain protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 11 568
95 % 14 14 718
90 % 14 14 749
70 % 14 14 789
50 % 43 43 490
40 % 309 325 30
30 % 334 351 43
Entity #3 | Chains: C,F,I,R
Skeletal muscle Myosin II Essential Light Chain protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 553
95 % 15 15 700
90 % 15 15 732
70 % 23 24 503
50 % 23 24 586
40 % 310 325 30
30 % 335 351 43
Entity #4 | Chains: 0,1,2,3,4,5,7,8,9,V,W,X,Y,Z
Skeletal muscle Actin protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 122 20
95 % 173 173 13
90 % 178 178 14
70 % 181 181 23
50 % 183 183 33
40 % 202 202 32
30 % 222 222 50

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.