Sequence Similarity Clusters for the Entities in PDB 1M8Q

Entity #1 | Chains: A,D,G,P
Skeletal muscle Myosin II protein, length: 840 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 591
95 % 15 15 771
90 % 15 15 797
70 % 19 19 744
50 % 50 50 439
40 % 98 101 280
30 % 123 126 234
Entity #2 | Chains: B,E,H,Q
Skeletal muscle Myosin II Regulatory Light Chain protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 30 639
95 % 14 31 802
90 % 14 14 835
70 % 16 16 835
50 % 46 47 503
40 % 319 336 34
30 % 346 363 47
Entity #3 | Chains: C,F,I,R
Skeletal muscle Myosin II Essential Light Chain protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 626
95 % 15 15 795
90 % 15 15 825
70 % 24 25 598
50 % 24 25 640
40 % 320 336 34
30 % 347 363 47
Entity #4 | Chains: 0,1,2,3,4,5,7,8,9,V,W,X,Y,Z
Skeletal muscle Actin protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 123 22
95 % 178 178 15
90 % 183 183 15
70 % 187 187 23
50 % 190 190 37
40 % 209 209 39
30 % 229 229 52

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.