Sequence Similarity Clusters for the Entities in PDB 1M8O

Entity #1 | Chains: A
platelet integrin alfaIIb subunit: cytoplasmic domain protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 25195
95 % 3 4 21478
90 % 3 5 15128
70 % 3 5 14198
50 % 3 5 12599
40 % 3 5 11412
30 % 3 5 9925
Entity #2 | Chains: B
platelet integrin beta3 subunit: cytoplasmic domain protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74327
95 % 2 2 37099
90 % 2 2 35414
70 % 2 2 31472
50 % 2 2 26913
40 % 2 2 23767
30 % 2 2 20194

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures