Sequence Similarity Clusters for the Entities in PDB 1M8O

Entity #1 | Chains: A
platelet integrin alfaIIb subunit: cytoplasmic domain protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 25746
95 % 3 4 21914
90 % 3 5 15428
70 % 3 5 14467
50 % 3 5 12824
40 % 3 5 11610
30 % 3 5 10097
Entity #2 | Chains: B
platelet integrin beta3 subunit: cytoplasmic domain protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75641
95 % 2 2 37745
90 % 2 2 36001
70 % 2 2 31976
50 % 2 2 27310
40 % 2 2 24122
30 % 2 2 20485

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures