Sequence Similarity Clusters for the Entities in PDB 1M7W

Entity #1 | Chains: A,B,C,D
Hepatocyte nuclear factor 4-alpha protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19899
95 % 3 4 8252 Flexibility: Medium
Max RMSD: 7.2, Avg RMSD: 4.1
PDBFlex
90 % 3 4 8172
70 % 4 5 6819
50 % 4 5 6323
40 % 78 98 338
30 % 1214 1308 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3FS1 1 A Hepatocyte nuclear factor 4-alpha HNF4a Ligand Binding Domain 9606
2 1PZL 1 A Hepatocyte nuclear factor 4-alpha HNF4A-LDB 9606
3 1LV2 1 A Hepatocyte nuclear factor 4-gamma HNF4g LBD (residues 103-328) 9606
4 1M7W 1 A, B, C, D Hepatocyte nuclear factor 4-alpha Residues 133-382 10117
5 4B7W 1 A, B, C, D HEPATOCYTE NUCLEAR FACTOR 4-ALPHA LIGAND BINDING DOMAIN, RESIDUES 142-377 9606