Sequence Similarity Clusters for the Entities in PDB 1M7W

Entity #1 | Chains: A,B,C,D
Hepatocyte nuclear factor 4-alpha protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21189
95 % 3 4 8045 Flexibility: Medium
Max RMSD: 7.2, Avg RMSD: 4.1
PDBFlex
90 % 3 4 7974
70 % 4 5 6680
50 % 4 5 6213
40 % 77 95 329
30 % 1200 1291 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures