Sequence Similarity Clusters for the Entities in PDB 1M7D

Entity #1 | Chains: A
light chain of the monoclonal antibody Fab SYA/J6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22102
95 % 85 148 151
90 % 92 158 148
70 % 1084 2474 1
50 % 2213 5011 1
40 % 2213 5011 1
30 % 2524 5941 1
Entity #2 | Chains: B
heavy chain of the monoclonal antibody Fab SYA/J6 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28586
95 % 2 4 19019 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 4 18582
70 % 1070 2424 2
50 % 2214 5011 1
40 % 2214 5011 1
30 % 2525 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures