Sequence Similarity Clusters for the Entities in PDB 1M7D

Entity #1 | Chains: A
light chain of the monoclonal antibody Fab SYA/J6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21256
95 % 85 146 147
90 % 92 156 148
70 % 1004 2329 1
50 % 2051 4717 1
40 % 2051 4717 1
30 % 2313 5571 1
Entity #2 | Chains: B
heavy chain of the monoclonal antibody Fab SYA/J6 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27608
95 % 2 4 18368 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 4 17965
70 % 992 2282 2
50 % 2052 4717 1
40 % 2052 4717 1
30 % 2314 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.