Sequence Similarity Clusters for the Entities in PDB 1M72

Entity #1 | Chains: A,B,C
Caspase-1 protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27472
95 % 1 1 22979 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 22295
70 % 1 1 20456
50 % 1 2 9022
40 % 65 100 250
30 % 69 112 225
Entity #2 | Chains: D,E,F
Ace-Asp-Glu-Val-Asp-chloromethylketone protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures