Sequence Similarity Clusters for the Entities in PDB 1M71

Entity #1 | Chains: A
light chain of the monoclonal antibody Fab SYA/J6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 19980
95 % 130 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 143 162 147
70 % 1786 2553 1
50 % 3631 5180 1
40 % 4118 5834 1
30 % 5126 7269 1
Entity #2 | Chains: B
heavy chain of the monoclonal antibody Fab SYA/J6 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26571
95 % 4 4 18121 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 4 4 17667
70 % 1753 2511 2
50 % 3632 5180 1
40 % 4119 5834 1
30 % 5127 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures