Sequence Similarity Clusters for the Entities in PDB 1M6X

Entity #1 | Chains: E,F
Symmetrized FRT site dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: I,J
Symmetrized FRT site dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: G,H
Symmetrized FRT site dna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B
Flp recombinase protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21032
95 % 4 5 6589 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.9
PDBFlex
90 % 4 5 6569
70 % 4 5 6386
50 % 4 5 5954
40 % 4 5 5552
30 % 4 5 4874
Entity #5 | Chains: C,D
Flp recombinase protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21032
95 % 5 5 6589 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.9
PDBFlex
90 % 5 5 6569
70 % 5 5 6386
50 % 5 5 5954
40 % 5 5 5552
30 % 5 5 4874

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1P4E 4 A, B Recombinase FLP protein C-terminal (His)6 tag via a glycine linker Flpe 4932
2 1P4E 5 C, D Recombinase FLP protein Posttranslational modification of TYR343 to PTR. This modification is a result of covalent binding to DNA. Flpe 4932
3 1FLO 3 A, B, C, D FLP RECOMBINASE FLP 4932
4 1M6X 4 A, B Flp recombinase Flpe 4932
5 1M6X 5 C, D Flp recombinase modified tyr343 Flpe 4932