Sequence Similarity Clusters for the Entities in PDB 1M6X

Entity #1 | Chains: E,F
Symmetrized FRT site dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: I,J
Symmetrized FRT site dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: G,H
Symmetrized FRT site dna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B
Flp recombinase protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21583
95 % 4 5 6774 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.9
PDBFlex
90 % 4 5 6741
70 % 4 5 6549
50 % 4 5 6086
40 % 4 5 5667
30 % 4 5 4965
Entity #5 | Chains: C,D
Flp recombinase protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21583
95 % 5 5 6774 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.9
PDBFlex
90 % 5 5 6741
70 % 5 5 6549
50 % 5 5 6086
40 % 5 5 5667
30 % 5 5 4965

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1M6X 4 A, B Flp recombinase Flpe 4932
2 1M6X 5 C, D Flp recombinase modified tyr343 Flpe 4932