Sequence Similarity Clusters for the Entities in PDB 1M6X

Entity #1 | Chains: E,F
Symmetrized FRT site dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: I,J
Symmetrized FRT site dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: G,H
Symmetrized FRT site dna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B
Flp recombinase protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17190
95 % 4 5 5233 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.9
PDBFlex
90 % 4 5 5248
70 % 4 5 5193
50 % 4 5 4944
40 % 4 5 4671
30 % 4 5 4266
Entity #5 | Chains: C,D
Flp recombinase protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17190
95 % 5 5 5233 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.9
PDBFlex
90 % 5 5 5248
70 % 5 5 5193
50 % 5 5 4944
40 % 5 5 4671
30 % 5 5 4266

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.