Sequence Similarity Clusters for the Entities in PDB 1M6X

Entity #1 | Chains: E,F
Symmetrized FRT site dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: I,J
Symmetrized FRT site dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: G,H
Symmetrized FRT site dna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B
Flp recombinase protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20868
95 % 4 5 6533 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.9
PDBFlex
90 % 4 5 6517
70 % 4 5 6331
50 % 4 5 5903
40 % 4 5 5504
30 % 4 5 4829
Entity #5 | Chains: C,D
Flp recombinase protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 20868
95 % 5 5 6533 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.9
PDBFlex
90 % 5 5 6517
70 % 5 5 6331
50 % 5 5 5903
40 % 5 5 5504
30 % 5 5 4829

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures