Sequence Similarity Clusters for the Entities in PDB 1M6V

Entity #1 | Chains: A,C,E,G
carbamoyl phosphate synthetase large chain protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 7693
95 % 6 10 1318 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 6 10 1341
70 % 6 10 1361
50 % 6 10 1407
40 % 6 10 1418
30 % 6 10 1398
Entity #2 | Chains: B,D,F,H
carbamoyl-phosphate synthetase small chain protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18518
95 % 6 10 1338 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 6 10 1360
70 % 6 10 1375
50 % 6 10 1425
40 % 6 10 1438
30 % 6 10 1411

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures