Sequence Similarity Clusters for the Entities in PDB 1M6O

Entity #1 | Chains: A
HLA class I histocompatibility antigen, BW-44(B-12) B*4402 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 8122
95 % 3 22 2545 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 51 224 137
70 % 105 771 6
50 % 108 785 7
40 % 108 837 9
30 % 112 964 12
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 107 701 2
95 % 111 716 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 111 725 4
70 % 123 979 4
50 % 126 1001 3
40 % 126 1001 6
30 % 126 1001 9
Entity #3 | Chains: C
HLA DPA*0201 peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures