Sequence Similarity Clusters for the Entities in PDB 1M6O

Entity #1 | Chains: A
HLA class I histocompatibility antigen, BW-44(B-12) B*4402 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 7176
95 % 3 22 2337 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 43 201 135
70 % 93 719 6
50 % 93 724 6
40 % 96 775 10
30 % 100 899 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 90 618 2
95 % 102 662 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 102 671 4
70 % 111 916 4
50 % 114 938 3
40 % 114 938 7
30 % 114 938 12
Entity #3 | Chains: C
HLA DPA*0201 peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures