Sequence Similarity Clusters for the Entities in PDB 1M6O

Entity #1 | Chains: A
HLA class I histocompatibility antigen, BW-44(B-12) B*4402 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 8011
95 % 3 22 2509 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 50 212 138
70 % 104 757 6
50 % 107 771 7
40 % 107 823 9
30 % 111 950 11
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 106 686 2
95 % 110 701 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 110 710 4
70 % 122 964 4
50 % 125 986 3
40 % 125 986 6
30 % 125 986 9
Entity #3 | Chains: C
HLA DPA*0201 peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures