Sequence Similarity Clusters for the Entities in PDB 1M6O

Entity #1 | Chains: A
HLA class I histocompatibility antigen, BW-44(B-12) B*4402 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6991
95 % 3 22 2276 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 42 199 132
70 % 88 687 6
50 % 88 692 6
40 % 91 742 10
30 % 94 859 15
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 85 596 2
95 % 97 639 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 97 648 4
70 % 105 878 4
50 % 108 900 3
40 % 108 900 8
30 % 108 900 14
Entity #3 | Chains: C
HLA DPA*0201 peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.