Sequence Similarity Clusters for the Entities in PDB 1M5V

Entity #1 | Chains: A,D
RNA INHIBITOR SUBSTRATE rna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: M,P
RNA INHIBITOR SUBSTRATE rna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: B,E
RNA HAIRPIN RIBOZYME rna, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: C,F
U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 60 253
95 % 13 63 330 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 0.8
PDBFlex
90 % 13 63 354
70 % 13 65 382
50 % 13 65 446
40 % 13 65 481
30 % 13 65 481

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.