Sequence Similarity Clusters for the Entities in PDB 1M5O

Entity #1 | Chains: A,D
RNA SUBSTRATE rna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,E
RNA HAIRPIN RIBOZYME rna, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,F
U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 60 235
95 % 8 63 311
90 % 8 63 331
70 % 8 65 349
50 % 8 65 406
40 % 8 65 443
30 % 8 65 437

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.