Sequence Similarity Clusters for the Entities in PDB 1M5O

Entity #1 | Chains: A,D
RNA SUBSTRATE rna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,E
RNA HAIRPIN RIBOZYME rna, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,F
U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 60 258
95 % 8 63 334 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 0.9
PDBFlex
90 % 8 63 356
70 % 8 65 383
50 % 8 65 448
40 % 8 65 484
30 % 8 65 488

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.