Sequence Similarity Clusters for the Entities in PDB 1M5O

Entity #1 | Chains: A,D
RNA SUBSTRATE rna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,E
RNA HAIRPIN RIBOZYME rna, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,F
U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 60 275
95 % 8 63 348 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 0.8
PDBFlex
90 % 8 63 370
70 % 8 65 395
50 % 8 65 464
40 % 8 65 501
30 % 8 65 505

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures