Sequence Similarity Clusters for the Entities in PDB 1M5N

Entity #1 | Chains: S
Importin beta-1 subunit protein, length: 485 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26351
95 % 6 6 5574 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.6
PDBFlex
90 % 6 6 5601
70 % 6 6 5506
50 % 6 6 5229
40 % 6 6 4936
30 % 6 6 4507
Entity #2 | Chains: Q
Parathyroid hormone-related protein protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76890
95 % 1 1 53554
90 % 1 1 50740
70 % 1 1 44371
50 % 1 1 37831
40 % 1 1 33357
30 % 1 1 28296

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures