Sequence Similarity Clusters for the Entities in PDB 1M57

Entity #1 | Chains: A,G
CYTOCHROME C OXIDASE protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 5098
95 % 12 12 2919 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 12 12 2977
70 % 16 16 2439
50 % 60 68 464
40 % 60 68 499
30 % 60 68 505
Entity #2 | Chains: B,H
CYTOCHROME C OXIDASE protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 2802
95 % 12 12 2840 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 12 12 2863
70 % 12 12 2873
50 % 13 13 2658
40 % 13 13 2615
30 % 57 65 517
Entity #3 | Chains: C,I
CYTOCHROME C OXIDASE protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14805
95 % 3 3 12097 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 3 11913
70 % 4 4 10386
50 % 4 4 9328
40 % 48 56 596
30 % 48 56 597
Entity #4 | Chains: D,J
CYTOCHROME C OXIDASE protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14268
95 % 3 3 13493 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 3 13242
70 % 3 3 12444
50 % 3 3 11080
40 % 4 4 8890
30 % 4 4 7680

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures