Sequence Similarity Clusters for the Entities in PDB 1M57

Entity #1 | Chains: A,G
CYTOCHROME C OXIDASE protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 30978
95 % 11 11 2693
90 % 11 11 2738
70 % 15 15 2243
50 % 52 60 468
40 % 52 60 500
30 % 52 60 502
Entity #2 | Chains: B,H
CYTOCHROME C OXIDASE protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 11 2119
95 % 11 11 2752
90 % 11 11 2798
70 % 11 11 2773
50 % 12 12 2625
40 % 12 12 2579
30 % 49 57 523
Entity #3 | Chains: C,I
CYTOCHROME C OXIDASE protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 12278
95 % 3 3 11900
90 % 3 3 11743
70 % 3 3 11119
50 % 4 4 8736
40 % 41 49 614
30 % 41 49 607
Entity #4 | Chains: D,J
CYTOCHROME C OXIDASE protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14041
95 % 3 3 13314
90 % 3 3 13112
70 % 3 3 12350
50 % 3 3 11023
40 % 3 3 10007
30 % 3 3 8722

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.