Sequence Similarity Clusters for the Entities in PDB 1M57

Entity #1 | Chains: A,G
CYTOCHROME C OXIDASE protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31452
95 % 11 11 2742 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 11 11 2787
70 % 15 15 2271
50 % 52 60 473
40 % 52 60 509
30 % 52 60 508
Entity #2 | Chains: B,H
CYTOCHROME C OXIDASE protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 2171
95 % 11 11 2805 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 11 11 2851
70 % 11 11 2822
50 % 12 12 2662
40 % 12 12 2618
30 % 49 57 532
Entity #3 | Chains: C,I
CYTOCHROME C OXIDASE protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 12492
95 % 3 3 12095
90 % 3 3 11926
70 % 3 3 11267
50 % 4 4 8841
40 % 41 49 625
30 % 41 49 615
Entity #4 | Chains: D,J
CYTOCHROME C OXIDASE protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14278
95 % 3 3 13525 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 3 3 13310
70 % 3 3 12512
50 % 3 3 11158
40 % 3 3 10126
30 % 3 3 8833

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.