Sequence Similarity Clusters for the Entities in PDB 1M57

Entity #1 | Chains: A,G
CYTOCHROME C OXIDASE protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 4809
95 % 12 12 2763 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 12 12 2828
70 % 16 16 2321
50 % 54 62 476
40 % 54 62 529
30 % 54 62 530
Entity #2 | Chains: B,H
CYTOCHROME C OXIDASE protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 2666
95 % 12 12 2707 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 12 12 2775
70 % 12 12 2749
50 % 13 13 2541
40 % 13 13 2498
30 % 51 59 547
Entity #3 | Chains: C,I
CYTOCHROME C OXIDASE protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14125
95 % 3 3 13284 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 3 13058
70 % 4 4 9926
50 % 4 4 8947
40 % 42 50 643
30 % 42 50 639
Entity #4 | Chains: D,J
CYTOCHROME C OXIDASE protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13619
95 % 3 3 12872 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 3 12661
70 % 3 3 11919
50 % 3 3 10635
40 % 4 4 8535
30 % 4 4 7379

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures