Sequence Similarity Clusters for the Entities in PDB 1M56

Entity #1 | Chains: A,G
CYTOCHROME C OXIDASE protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 4594
95 % 8 11 2785
90 % 8 11 2830
70 % 10 15 2314
50 % 41 60 478
40 % 41 60 520
30 % 41 60 518
Entity #2 | Chains: B,H
CYTOCHROME C OXIDASE protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 2213
95 % 8 11 2848
90 % 8 11 2891
70 % 8 11 2862
50 % 8 12 2709
40 % 8 12 2661
30 % 39 57 541
Entity #3 | Chains: C,I
CYTOCHROME C OXIDASE protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 12672
95 % 1 3 12248
90 % 1 3 12078
70 % 1 3 11414
50 % 1 4 8953
40 % 32 49 634
30 % 32 49 619
Entity #4 | Chains: D,J
CYTOCHROME C OXIDASE protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 14484
95 % 1 3 13702
90 % 1 3 13488
70 % 1 3 12681
50 % 1 3 11310
40 % 1 3 10256
30 % 1 3 8949

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures