Sequence Similarity Clusters for the Entities in PDB 1M43

Entity #1 | Chains: A,B
plasmepsin II protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 3525
95 % 10 20 1360 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 10 20 1382
70 % 10 26 1047
50 % 10 29 962
40 % 10 29 983
30 % 932 1116 11
Entity #2 | Chains: C,D
Pepstatin protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures