Sequence Similarity Clusters for the Entities in PDB 1M3V

Entity #1 | Chains: A
fusion of the LIM interacting domain of ldb1 and the N-terminal LIM domain of LMO4 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62543
95 % 1 1 45919
90 % 1 1 43666
70 % 2 2 23717
50 % 6 6 7350
40 % 6 6 6493
30 % 6 6 5683

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1RUT 1 X Fusion protein of Lmo4 protein and LIM domain-binding protein 1 Fusion of LMO4 residues 16-152 to ldb1 LID residues 300-339 via a flexible linker with sequence GGSGGSGGSGG 10090
2 2DFY 1 C, X fusion protein of LIM domain transcription factor LMO4 and LIM domain-binding protein 1 Cyclised fusion of LMO4 residues 18-152 to LDB1 LID residues 300-339 via two flexible linkers with sequence GGSGGSGGSGG and TRESGSIEF LMO4 10090
3 4JCJ 1 A, B, C Insulin gene enhancer protein ISL-1,LIM domain-binding protein 1 UNP RESIDUES 11-138 and unp residues 300-330 10090
4 2LXD 1 A Rhombotin-2, LINKER, LIM domain-binding protein 1 FUSION PROTEIN OF RHOMBOTIN-2, LINKER, LIM DOMAIN-BINDING PROTEIN 1 UNP residues 84-156, UNP residues 226-375 32630
5 1J2O 1 A Fusion of Rhombotin-2 and LIM domain-binding protein 1 Protein is a fusion of the N-terminal LIM domain of LMO2 (residues 26-87) followed by an eleven residue linker (GGSGGHMGSGG) than the LID domain from ldb1 (residues 300-339). Originally expressed as a fusion with GST. GST portion removed by treatment with thrombin. 10090
6 1M3V 1 A fusion of the LIM interacting domain of ldb1 and the N-terminal LIM domain of LMO4 Fusion protein comprises LIM domain transcription factor LMO4 (residues 16-86) via glycine-rich linker (GGSGGHMGSGG), LIM domain-binding protein 1 (residues 300-339). 10090