Sequence Similarity Clusters for the Entities in PDB 1M3V

Entity #1 | Chains: A
fusion of the LIM interacting domain of ldb1 and the N-terminal LIM domain of LMO4 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67834
95 % 1 1 46677
90 % 1 1 44255
70 % 1 1 38799
50 % 3 3 18497
40 % 3 3 16486
30 % 3 3 14104

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2LXD 1 A Rhombotin-2, LINKER, LIM domain-binding protein 1 FUSION PROTEIN OF RHOMBOTIN-2, LINKER, LIM DOMAIN-BINDING PROTEIN 1 UNP residues 84-156, UNP residues 226-375 32630
2 1J2O 1 A Fusion of Rhombotin-2 and LIM domain-binding protein 1 Protein is a fusion of the N-terminal LIM domain of LMO2 (residues 26-87) followed by an eleven residue linker (GGSGGHMGSGG) than the LID domain from ldb1 (residues 300-339). Originally expressed as a fusion with GST. GST portion removed by treatment with thrombin. 10090
3 1M3V 1 A fusion of the LIM interacting domain of ldb1 and the N-terminal LIM domain of LMO4 Fusion protein comprises LIM domain transcription factor LMO4 (residues 16-86) via glycine-rich linker (GGSGGHMGSGG), LIM domain-binding protein 1 (residues 300-339). 10090