Sequence Similarity Clusters for the Entities in PDB 1M3J

Entity #1 | Chains: A,B
perfringolysin o protein, length: 471 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 10225
95 % 4 7 5439 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 4 7 5461
70 % 4 8 4600
50 % 4 8 4422
40 % 13 20 2047
30 % 13 20 1975

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures