Sequence Similarity Clusters for the Entities in PDB 1M3H

Entity #1 | Chains: B
5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(P*GP*CP*GP*TP*CP*CP*AP*(DDX))-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D
5'-D(P*GP*TP*CP*TP*AP*CP*C)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
8-Oxoguanine DNA Glycosylase protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 25165
95 % 8 28 1943
90 % 8 28 1993
70 % 8 28 2006
50 % 8 28 1996
40 % 8 28 2002
30 % 8 28 1926

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.