Sequence Similarity Clusters for the Entities in PDB 1M3D

Entity #1 | Chains: A,B,D,E,G,H,J,K
Type IV Collagen Noncollagenous Domain- Alpha1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 1567
95 % 4 4 1735 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 4 1771
70 % 4 4 1793
50 % 7 8 1180
40 % 7 8 1193
30 % 7 8 1169
Entity #2 | Chains: C,F,I,L
Type IV Collagen Noncollagenous Domain- Alpha2 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 3992
95 % 4 4 4132 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 4 4162
70 % 4 4 4097
50 % 8 8 1180
40 % 8 8 1193
30 % 8 8 1169

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.