Sequence Similarity Clusters for the Entities in PDB 1M3D

Entity #1 | Chains: A,B,D,E,G,H,J,K
Type IV Collagen Noncollagenous Domain- Alpha1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 1630
95 % 4 4 1827 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 4 1867
70 % 4 4 1881
50 % 7 8 1225
40 % 7 8 1232
30 % 7 8 1210
Entity #2 | Chains: C,F,I,L
Type IV Collagen Noncollagenous Domain- Alpha2 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4169
95 % 4 4 4292 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 4 4330
70 % 4 4 4249
50 % 8 8 1225
40 % 8 8 1232
30 % 8 8 1210

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures