Sequence Similarity Clusters for the Entities in PDB 1M3D

Entity #1 | Chains: A,B,D,E,G,H,J,K
Type IV Collagen Noncollagenous Domain- Alpha1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 1376
95 % 4 4 1568
90 % 4 4 1602
70 % 4 4 1629
50 % 7 8 1084
40 % 7 8 1100
30 % 7 8 1083
Entity #2 | Chains: C,F,I,L
Type IV Collagen Noncollagenous Domain- Alpha2 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 3597
95 % 4 4 3771
90 % 4 4 3804
70 % 4 4 3739
50 % 8 8 1084
40 % 8 8 1100
30 % 8 8 1083

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.