Sequence Similarity Clusters for the Entities in PDB 1M3D

Entity #1 | Chains: A,B,D,E,G,H,J,K
Type IV Collagen Noncollagenous Domain- Alpha1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 1592
95 % 4 4 1757 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 4 1798
70 % 4 4 1821
50 % 7 8 1197
40 % 7 8 1209
30 % 7 8 1185
Entity #2 | Chains: C,F,I,L
Type IV Collagen Noncollagenous Domain- Alpha2 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4061
95 % 4 4 4189 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 4 4 4219
70 % 4 4 4150
50 % 8 8 1197
40 % 8 8 1209
30 % 8 8 1185

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures