Sequence Similarity Clusters for the Entities in PDB 1M34

Entity #1 | Chains: A,C,I,K
Nitrogenase Molybdenum-Iron Protein alpha chain protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 16 816
95 % 17 25 773 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 17 25 799
70 % 22 31 664
50 % 22 31 716
40 % 22 31 747
30 % 23 33 666
Entity #2 | Chains: B,D,J,L
Nitrogenase Molybdenum-Iron Protein beta chain protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 687
95 % 17 25 772 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 17 25 798
70 % 17 25 843
50 % 22 31 714
40 % 22 31 746
30 % 22 31 739
Entity #3 | Chains: E,F,G,H,M,N,O,P
Nitrogenase Iron Protein 1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 732
95 % 4 21 639 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 4 21 666
70 % 4 21 709
50 % 5 22 730
40 % 5 22 763
30 % 5 22 757

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.