Sequence Similarity Clusters for the Entities in PDB 1M34

Entity #1 | Chains: A,C,I,K
Nitrogenase Molybdenum-Iron Protein alpha chain protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 1285
95 % 19 27 765 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 19 27 790
70 % 24 33 679
50 % 24 33 734
40 % 24 33 764
30 % 30 41 608
Entity #2 | Chains: B,D,J,L
Nitrogenase Molybdenum-Iron Protein beta chain protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 27 621
95 % 19 27 757 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 19 27 784
70 % 19 27 833
50 % 24 33 732
40 % 24 33 760
30 % 24 33 765
Entity #3 | Chains: E,F,G,H,M,N,O,P
Nitrogenase Iron Protein 1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 21 549
95 % 4 21 686 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 4 21 713
70 % 5 22 730
50 % 5 22 784
40 % 5 22 815
30 % 5 22 820

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures