Sequence Similarity Clusters for the Entities in PDB 1M34

Entity #1 | Chains: A,C,I,K
Nitrogenase Molybdenum-Iron Protein alpha chain protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 15 845
95 % 16 24 785 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 16 24 815
70 % 21 30 677
50 % 21 30 720
40 % 21 30 753
30 % 21 31 696
Entity #2 | Chains: B,D,J,L
Nitrogenase Molybdenum-Iron Protein beta chain protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 22 701
95 % 16 24 784 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 16 24 814
70 % 16 24 858
50 % 21 30 718
40 % 21 30 752
30 % 21 30 743
Entity #3 | Chains: E,F,G,H,M,N,O,P
Nitrogenase Iron Protein 1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 716
95 % 4 21 614 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 4 21 645
70 % 4 21 689
50 % 5 22 702
40 % 5 22 740
30 % 5 22 732

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.