Sequence Similarity Clusters for the Entities in PDB 1M34

Entity #1 | Chains: A,C,I,K
Nitrogenase Molybdenum-Iron Protein alpha chain protein, length: 491 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 16 822
95 % 17 25 775 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 17 25 802
70 % 22 31 679
50 % 22 31 730
40 % 22 31 762
30 % 23 33 684
Entity #2 | Chains: B,D,J,L
Nitrogenase Molybdenum-Iron Protein beta chain protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 694
95 % 17 25 774 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 17 25 801
70 % 17 25 845
50 % 22 31 728
40 % 22 31 761
30 % 22 31 752
Entity #3 | Chains: E,F,G,H,M,N,O,P
Nitrogenase Iron Protein 1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 741
95 % 4 21 645 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 4 21 672
70 % 4 21 716
50 % 5 22 738
40 % 5 22 776
30 % 5 22 769

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.