Sequence Similarity Clusters for the Entities in PDB 1M2Z

Entity #1 | Chains: A,D
glucocorticoid receptor protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39558
95 % 24 27 1173 Flexibility: Medium
Max RMSD: 16.7, Avg RMSD: 6.1
PDBFlex
90 % 24 27 1196
70 % 52 56 525
50 % 160 171 204
40 % 160 171 222
30 % 160 171 233
Entity #2 | Chains: B,E
nuclear receptor coactivator 2 protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25744
95 % 2 2 21912 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.8
PDBFlex
90 % 2 2 21268
70 % 2 2 19510
50 % 2 2 16939
40 % 2 2 15107
30 % 2 2 12955

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures